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Learn how to translate nucleotide triplets (DNA or RNA codons) into amino acids or signals using standard or alternative genetic codes. See the standard and inverse tables, as well as the biochemical properties and IUPAC notation of each amino acid.
The extensible NEXUS file format is widely used in bioinformatics.It stores information about taxa, morphological and molecular characters, distances, genetic codes, assumptions, sets, trees, etc. [1] Several popular phylogenetic programs such as PAUP*, [2] MrBayes, [3] Mesquite, [4] MacClade [5] and SplitsTree [6] use this format.
Gene Codes Corporation is a bioinformatics software company that develops Sequencher, a sequencing software for DNA sequence analysis. Sequencher can perform Sanger and Next Generation Sequencing, alignment, assembly, annotation, and report generation.
For DNA, RNA and protein molecules up to 32MB, aligns all sequences of size K or greater, MSA or within a single molecule. Similar alignments are grouped together for analysis. Automatic repetitive sequence filter. Both Local E. Wachtel 2017 Free AMAP: Sequence annealing: Both: Global: A. Schwartz and L. Pachter: 2006: BAli-Phy
Learn about the process and tools of sequence analysis in bioinformatics, which involves comparing and interpreting DNA, RNA or peptide sequences to understand their features, function, structure, or evolution. Explore the history, overview, and examples of sequence analysis for nucleotide and protein sequences.
DNAnexus is an American company that provides a cloud-based data analysis and management platform for DNA sequence data. It was founded in 2009 by Stanford professors and computer scientists, and has collaborated with Google, Baylor, and Geisinger on large-scale genomics projects.
The Staden package consists of several different programs. The main components are: pregap4 – base calling with Phred, end clipping, and vector trimming; trev – trace viewing and editing; gap4 – sequence assembly, contig editing, and finishing; gap5 – assembly visualising, editing, and finishing of NGS data [1]
A comprehensive list of computer software for bioinformatics and genomic analysis, released under open-source licenses and with Wikipedia articles. The list covers various platforms, languages, licenses, and applications, such as BLAST, Bioconductor, Galaxy, and SOAP.