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  2. Pinus taeda - Wikipedia

    en.wikipedia.org/wiki/Pinus_taeda

    Download QR code; Print/export ... Pinus taeda, commonly known as ... Loblolly pine is the first among over 100 species of Pinus to have its complete genome sequenced ...

  3. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Web browser: LGPL: Broad Institute, collaborative project GENtle: An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Linux, macOS, Windows: GPL: Magnus Manske: gget: Efficient querying of genomic reference databases including UniProt, National Center for Biotechnology Information, and Ensembl genome ...

  4. List of sequenced plant genomes - Wikipedia

    en.wikipedia.org/.../List_of_sequenced_plant_genomes

    Pinus taeda (Loblolly pine) Pinales: Timber 20.15 Gb 9,024 [14] 12 2014 [18] [19] [20] N50 scaffold size: 66.9 kbp Pinus lambertiana (Sugar pine) Pinales: Timber; with the largest genomes among the pines; the largest pine species 31 Gb 13,936 12 2016 [14] 61.5X sequence coverage, platforms used: Hiseq 2000, Hiseq 2500, GAIIx, MiSeq Ginkgo ...

  5. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    UCSC Malaria Genome Browser: genome of malaria causing species (Plasmodium falciparum and others) Wormbase: genome of the model organism Caenorhabditis elegans and WormBase ParaSite for parasitic species; Xenbase: genome of the model organism Xenopus tropicalis and Xenopus laevis; Zebrafish Information Network: genome of this fish model organism

  6. UCSC Genome Browser - Wikipedia

    en.wikipedia.org/wiki/UCSC_Genome_Browser

    The UCSC Genome Browser is an online and downloadable genome browser hosted by the University of California, Santa Cruz (UCSC). [2] [3] [4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.

  7. The Genomic HyperBrowser - Wikipedia

    en.wikipedia.org/wiki/The_Genomic_HyperBrowser

    The HyperBrowser allows a range of genomic investigations (for example, including regulation of gene expression, disease association or epigenetic modifications of the genome). [4] The primary focus of the system is on statistical inference on relations between genomic tracks, though simpler descriptive statistics and analysis of individual ...

  8. Generic Model Organism Database - Wikipedia

    en.wikipedia.org/wiki/Generic_Model_Organism...

    Genome Editing and Visualization Apollo: a Java application for viewing and editing genome annotations [7] [8] GBrowse: a CGI application for displaying genome annotations [9] [10] JBrowse: a JavaScript application for displaying genome annotations [11] Pathway Tools: a genome browser with a comparative mode; Comparative Genomics

  9. Genomespace - Wikipedia

    en.wikipedia.org/wiki/Genomespace

    GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop tools and facilitates the transfer of data between tools via automatic format conversion.