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FASTGenomics enables the user to upload their own data and generate customized and reproducible workflows for the exploration and analysis of gene expression data (Scholz et al. 2018). FX FX is a user-Friendly RNA-Seq gene eXpression analysis tool, empowered by the concept of cloud-computing. With FX, you can simply upload your RNA-Seq raw ...
Created by Jason Thomas, GEP4J is an open-source implementation of gene expression programming in Java. It implements different GEP algorithms, including evolving decision trees (with nominal, numeric, or mixed attributes) and automatically defined functions. GEP4J is hosted at Google Code. PyGEP – Gene Expression Programming for Python
The process of gene expression is used by all known life—eukaryotes (including multicellular organisms), prokaryotes (bacteria and archaea), and utilized by viruses—to generate the macromolecular machinery for life. In genetics, gene expression is the most fundamental level at which the genotype gives rise to the phenotype, i.e. observable ...
RNA-Seq (named as an abbreviation of RNA sequencing) is a technique that uses next-generation sequencing to reveal the presence and quantity of RNA molecules in a biological sample, providing a snapshot of gene expression in the sample, also known as transcriptome. [2] [3]
Genetic programming (GP) is an evolutionary algorithm, an artificial intelligence technique mimicking natural evolution, which operates on a population of programs.It applies the genetic operators selection according to a predefined fitness measure, mutation and crossover.
All steps in the transcription are subject to some degree of regulation. [1] Transcription initiation in particular is the primary level at which gene expression is regulated. Targeting the rate-limiting initial step is the most efficient in terms of energy costs for the cell.
An example Gene Ontology (GO) ancestor chart organized as a directed acyclic graph taken from QuickGO. [39] It shows the molecular functions, biological processes, and cellular components in which the matrilin complex, a component of the extracellular matrix, is involved. Every box is an ontology term that falls into one of the three GO ...
In the field of molecular biology, gene expression profiling is the measurement of the activity (the expression) of thousands of genes at once, to create a global picture of cellular function. These profiles can, for example, distinguish between cells that are actively dividing, or show how the cells react to a particular treatment.