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Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [2] A quantitative study [3] shows that proteins of TM-score = 0.5 have a posterior probability of 37% in the same CATH topology family and of 13% in the same SCOP fold family. The ...
I-TASSER is a template-based method for protein structure and function prediction. [1] ... predicted TM-score and RMSD for the first model, ...
The original GDT_TS is calculated based on the superimpositions and GDT scores produced by the Local-Global Alignment (LGA) program. [1] A "high accuracy" version called GDT_HA is computed by selection of smaller cutoff distances (half the size of GDT_TS) and thus more heavily penalizes larger deviations from the reference structure.
This page was last edited on 7 February 2024, at 11:13 (UTC).; Text is available under the Creative Commons Attribution-ShareAlike 4.0 License; additional terms may apply.
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TM-score – a different structure comparison measure; Longest continuous segment (LCS) — A different structure comparison measure; Global distance calculation (GDC_sc, GDC_all) — Structure comparison measures that use full-model information (not just α-carbon) to assess similarity
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