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In computational biology, N50 and L50 are statistics of a set of contig or scaffold lengths. The N50 is similar to a mean or median of lengths, but has greater weight given to the longer contigs. It is used widely in genome assembly , especially in reference to contig lengths within a draft assembly.
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As of 2011, most SRA sequence data was produced by Illumina's Genome Analyzer. [5] The volume of data deposited in the Sequence Read Archive has grown rapidly. As of September 2010, 65% of the SRA was human genomic sequence, with another 16% relating to human metagenome sequence reads. [6] Much of this data was deposited through the 1000 ...
In computing, sequential access memory (SAM) is a class of data storage devices that read stored data in a sequence. This is in contrast to random access memory (RAM) where data can be accessed in any order. Sequential access devices are usually a form of magnetic storage or optical storage. [1] [2]
A maximum length sequence (MLS) is a type of pseudorandom binary sequence.. They are bit sequences generated using maximal linear-feedback shift registers and are so called because they are periodic and reproduce every binary sequence (except the zero vector) that can be represented by the shift registers (i.e., for length-m registers they produce a sequence of length 2 m − 1).
Alignment-free methods can broadly be classified into five categories: a) methods based on k-mer/word frequency, b) methods based on the length of common substrings, c) methods based on the number of (spaced) word matches, d) methods based on micro-alignments, e) methods based on information theory and f) methods based on graphical representation.
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Using the concept of the impossibility of a gambling system, von Mises defined an infinite sequence of zeros and ones as random if it is not biased by having the frequency stability property i.e. the frequency of zeros goes to 1/2 and every sub-sequence we can select from it by a "proper" method of selection is also not biased.