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  2. Molecular Evolutionary Genetics Analysis - Wikipedia

    en.wikipedia.org/wiki/Molecular_Evolutionary...

    The monograph Molecular Evolutionary Genetics Analysis was often used as a textbook for new ways to study molecular evolution. MEGA has been updated and expanded several times and currently all these versions are available from the MEGA website. The latest release, MEGA7, has been optimized for use on 64-bit computing systems. MEGA is in two ...

  3. Mega2, the Manipulation Environment for Genetic Analysis

    en.wikipedia.org/wiki/Mega2,_the_Manipulation...

    Mega2 is a data manipulation software for applied statistical genetics. Mega is an acronym for Manipulation Environment for Genetic Analysis. The software allows the applied statistical geneticist to convert one's data from several input formats to a large number output formats suitable for analysis by commonly used software packages.

  4. List of phylogenetics software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetics_software

    Three-item analysis for phylogenetics and biogeography: Three-item analysis: J. Ducasse, N. Cao & R. Zaragüeta-Bagils MEGA: Molecular Evolutionary Genetics Analysis: Distance, Parsimony and Maximum Composite Likelihood Methods: Tamura K, Dudley J, Nei M & Kumar S MegAlign Pro MegAlign Pro is part of DNASTAR's Lasergene Molecular Biology ...

  5. Molecular phylogenetics - Wikipedia

    en.wikipedia.org/wiki/Molecular_phylogenetics

    MEGA (molecular evolutionary genetics analysis) is an analysis software that is user-friendly and free to download and use. This software is capable of analyzing both distance-based and character-based tree methodologies. MEGA also contains several options one may choose to utilize, such as heuristic approaches and bootstrapping.

  6. List of phylogenetic tree visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetic_tree...

    A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace [25] and other phylogeny-inspired analysis. All [26] MEGA: Software for statistical analysis of molecular evolution. It includes different tree visualization features All [27] MultiDendrograms

  7. Nucleotide diversity - Wikipedia

    en.wikipedia.org/wiki/Nucleotide_diversity

    DnaSP — DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data.; MEGA, Molecular Evolutionary Genetics Analysis, is a software package used for estimating rates of molecular evolution, as well as generating phylogenetic trees, and aligning DNA sequences.

  8. Patrocladogram - Wikipedia

    en.wikipedia.org/wiki/Patrocladogram

    Most phylograms are saved in some variant of the Newick format such as: PAUP*, MEGA, Molecular Evolutionary Genetics Analysis, Clustal, PHYLIP, or Nexus file.These various versions of the Newick format can then be used as an input for patristic distances in patrocladogram formation.

  9. Outline of evolution - Wikipedia

    en.wikipedia.org/wiki/Outline_of_evolution

    Experimental evolution – Use of laboratory and field experiments to explore evolutionary dynamics; Molecular evolution – Process of change in the sequence composition of cellular molecules across generations; Phylogenetics – Study of evolutionary relationships between organisms; Population genetics – Subfield of genetics