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An interactive viewer for large phylogenetic trees and networks: All [22] DensiTree A viewer capable of viewing multiple overlaid trees. All [23] FigTree: Simple Java tree viewer able to read newick and nexus tree files. Can be used to color branches and produce vector artwork. All [24] JEvTrace
Fast ML tree reconstruction, bootstrap analysis, model selection, hypothesis testing, tree calibration, tree manipulation and visualization, computation of sitewise rates, sequence simulation, many models of evolution (DNA, protein, rRNA, mixed protein, user-definable), GUI and scripting language: Maximum likelihood, distances, and others
Windows Official website manual: JSAV No No No A JavaScript component allowing integrating an alignment viewer into web pages An array of JavaScript objects Free, GPL 2 Yes Browser Official website: Lucid Align No No No Native desktop alignment viewer, uses trackpad/mouse gestures. Allows streaming remote data BAM, FASTQ, FASTA
Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees.This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics.
Tree-sitter parsers have been written for these languages and many others. [11] GitHub uses Tree-sitter to support in-browser symbolic code navigation in Git repositories. [12] Tree-sitter uses a GLR parser, a type of LR parser. [13] [14] [12] Tree-sitter was originally developed by GitHub for use in the Atom text editor, where it was first ...
Dendroscope is an interactive computer software program written in Java for viewing Phylogenetic trees. [1] This program is designed to view trees of all sizes and is very useful for creating figures.
A tree view is usually a vertical list of nodes arranged in a tree-like structure. [1] [2] Each node represents a single data item, displayed as an indented line of text or a rectangular box. The indentation (and sometimes a line drawn between nodes) is used to indicate levels of hierarchy. Every treeview has a root node from which all nodes ...
Tree-traversal APIs accessible from a programming language, for example DOM. XML data binding, which provides an automated translation between an XML document and programming-language objects. Declarative transformation languages such as XSLT and XQuery. Syntax extensions to general-purpose programming languages, for example LINQ and Scala.