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The root microbiome (also called rhizosphere microbiome) is the dynamic community of microorganisms associated with plant roots. [1] Because they are rich in a variety of carbon compounds, plant roots provide unique environments for a diverse assemblage of soil microorganisms, including bacteria, fungi, and archaea.
In addition, it has been shown that rhizobia are part of the rhizosphere of a wide variety of non-legume plants. They can be plant growth-promoting components, recovering a central role in the plant core microbiome. [55] [41]
The plant microbiome, also known as the phytomicrobiome, plays roles in plant health and productivity and has received significant attention in recent years. [ 1 ] [ 2 ] The microbiome has been defined as "a characteristic microbial community occupying a reasonably well-defined habitat which has distinct physio-chemical properties.
Interactions between the host plant and phyllosphere bacteria have the potential to drive various aspects of host plant physiology. [8] [2] [9] However, as of 2020 knowledge of these bacterial associations in the phyllosphere remains relatively modest, and there is a need to advance fundamental knowledge of phyllosphere microbiome dynamics. [10 ...
In recent years, various cutting-edge tools developed for studying the associations between microbes and plants and extensive modern research on plant microbiomes have dramatically furthered knowledge on ecological functions and key roles of the plant microbiome in supporting plant adaptability to dynamic environments. [14]
The rhizosphere is the thin area of soil immediately surrounding the root system. It is a densely populated area in which the roots compete with invading root systems of neighboring plant species for space, water, and mineral nutrients as well as form positive and negative relationships with soil-borne microorganisms such as bacteria, fungi and insects.
A greater diversity of plants in a soil leads to a greater diversity of microbes in the rhizosphere and furthermore can lead to greater suppression of soil diseases. [9] Management, such as informed crop rotation and soil solarization , can create suppressive soils that naturally suppress pathogens.
Direct mechanisms of plant growth promotion by PGPRs can be demonstrated in the absence of plant pathogens or other rhizosphere microorganisms, while indirect mechanisms involve the ability of PGPRs to reduce the harmful effects of plant pathogens on crop yield. PGPRs have been reported to directly enhance plant growth by a variety of mechanisms: