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As of 2002, the number of classified green plant species was estimated to be around 370,000, however, there are probably many thousands more yet unclassified. [10] Despite this number, very few of these species have detailed DNA sequence information to date; 125,426 species in GenBank, as of 11 April 2012, [11] but most (>95%) having DNA sequence for only one or two genes. "...almost none of ...
TRANSFAC: a database about eukaryotic transcription factors, their genomic binding sites and DNA-binding profiles; JASPAR: a database of manually curated, non-redundant transcription factor binding profiles. MetOSite: a database about methionine sulfoxidation sites and its functional roles in proteins [35]
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
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Equine transcriptome (University of California, Davis). Escherichia coli Ecomics – an omics normalized database for Escherichia coli. Fish Phylofish. Ginger Ginger - Ginger transcriptome database. Lygodium japonicum Lygodium japonicum Transcriptome Database. Mammals Mammalian Transcriptomic Database.
Ensembl genome database project is a scientific project at the European Bioinformatics Institute, which provides a centralized resource for geneticists, molecular biologists and other researchers studying the genomes of our own species and other vertebrates and model organisms.
Model plant: 206.7 Mbp 32,670 [58] 8: 2011 [58] 8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers Arabidopsis thaliana Ecotype:Columbia: Brassicaceae: Model plant: 135 Mbp: 27,655 [59] 5 AGI 2000 [60] Barbarea vulgaris. G-type. Brassicaceae: Model plant for specialised metabolites and plant defenses 167.7 Mbp 25,350 8 2017 [61]
For example, a database of SNPs used in Douglas fir breeding programs was created by de novo transcriptome analysis in the absence of a sequenced genome. [159] Similarly, genes that function in the development of cardiac, muscle, and nervous tissue in lobsters were identified by comparing the transcriptomes of the various tissue types without ...