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The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants. It was announced in 2008 and headed by Gane Ka-Shu Wong and Michael Deyholos of the University of Alberta .
The TIGR Plant Transcript Assemblies database in computational biology is a repository of sequences collected for the construction of transcript assemblies. [1]
Contains manual curations of public transcriptome datasets, focusing on medical and plant biology data. Individual experiments are normalised across the full database to allow comparison of gene expression across diverse experiments. Full functionality requires licence purchase, with free access to a limited functionality. RefEx [172] DDBJ: All
Diagram illustrating genomics. The branches of science known informally as omics are various disciplines in biology whose names end in the suffix -omics, such as genomics, proteomics, metabolomics, metagenomics, phenomics and transcriptomics.
Early diverging land plant: Ceratodon purpureus: Bryophytes: Early diverging land plant: Fontinalis antipyretica (greater water-moss) Bryophytes: Aquatic moss 385.2 Mbp 16,538 BGI: 2020 [1] BGISEQ-500 & 10X, scaffold N50 45.8 Kbp Marchantia polymorpha: Bryophytes: Early diverging land plant 225.8 Mb 19,138 2017 [2] Physcomitrella patens ssp ...
A first-of-its-kind artificial intelligence model has been trained using more than 1,100 species of plants around the world ... plant stress and growth — across the transcriptome of the cell: or ...
The term transcriptome is a portmanteau of the words transcript and genome; it is associated with the process of transcript production during the biological process of transcription. The early stages of transcriptome annotations began with cDNA libraries published in the 1980s. Subsequently, the advent of high-throughput technology led to ...
RNA-Seq [1] [2] [3] is a technique [4] that allows transcriptome studies (see also Transcriptomics technologies) based on next-generation sequencing technologies. This technique is largely dependent on bioinformatics tools developed to support the different steps of the process.