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reStructuredText (RST, ReST, or reST) is a file format for textual data used primarily in the Python programming language community for technical documentation.. It is part of the Docutils project of the Python Doc-SIG (Documentation Special Interest Group), aimed at creating a set of tools for Python similar to Javadoc for Java or Plain Old Documentation (POD) for Perl.
Biopython can read and write to a number of common sequence formats, including FASTA, FASTQ, GenBank, Clustal, PHYLIP and NEXUS. When reading files, descriptive information in the file is used to populate the members of Biopython classes, such as SeqRecord. This allows records of one file format to be converted into others.
Numeric literals in Python are of the normal sort, e.g. 0, -1, 3.4, 3.5e-8. Python has arbitrary-length integers and automatically increases their storage size as necessary. Prior to Python 3, there were two kinds of integral numbers: traditional fixed size integers and "long" integers of arbitrary size.
When using the Python shell, the primary prompt: >>>, is followed by new commands. The secondary prompt: ..., is used when continuing commands on multiple lines; and the result of executing the command is expected on following lines. A blank line, or another line starting with the primary prompt is seen as the end of the output from the command.
John Gruber created Markdown in 2004 as an easy-to-read markup language. [9] Markdown is widely used for blogging and instant messaging , and also used elsewhere in online forums , collaborative software , documentation pages, and readme files .
In these languages, including the line __DATA__ (Perl) or __END__ (Ruby, old Perl) marks the end of the code segment and the start of the data segment. Only the contents prior to this line are executed, and the contents of the source file after this line are available as a file object: PACKAGE::DATA in Perl (e.g., main::DATA) and DATA in Ruby ...
The actual shapefile relates specifically to the .shp file, but alone is incomplete for distribution as the other supporting files are required. In line with the ESRI Shapefile Technical Description, [1] legacy GIS software may expect that the filename prefix be limited to eight characters to conform to the DOS 8.3 filename convention, though ...
Its fixed-column width format is limited to 80 or 140 [4] columns, which was based on the width of the computer punch cards that were previously used to exchange the coordinates. [5] Through the years the file format has undergone many changes and revisions. The final update to the PDB file format was in November 2012 with version 3.30. [6]