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The standard algorithm for hierarchical agglomerative clustering (HAC) has a time complexity of () and requires () memory, which makes it too slow for even medium data sets. . However, for some special cases, optimal efficient agglomerative methods (of complexity ()) are known: SLINK [2] for single-linkage and CLINK [3] for complete-linkage clusteri
Ward's minimum variance method can be defined and implemented recursively by a Lance–Williams algorithm. The Lance–Williams algorithms are an infinite family of agglomerative hierarchical clustering algorithms which are represented by a recursive formula for updating cluster distances at each step (each time a pair of clusters is merged).
For this reason, their use in hierarchical clustering techniques is far from optimal. [1] Edge betweenness centrality has been used successfully as a weight in the Girvan–Newman algorithm. [1] This technique is similar to a divisive hierarchical clustering algorithm, except the weights are recalculated with each step.
Ideas from density-based clustering methods (in particular the DBSCAN/OPTICS family of algorithms) have been adapted to subspace clustering (HiSC, [25] hierarchical subspace clustering and DiSH [26]) and correlation clustering (HiCO, [27] hierarchical correlation clustering, 4C [28] using "correlation connectivity" and ERiC [29] exploring ...
In the theory of cluster analysis, the nearest-neighbor chain algorithm is an algorithm that can speed up several methods for agglomerative hierarchical clustering.These are methods that take a collection of points as input, and create a hierarchy of clusters of points by repeatedly merging pairs of smaller clusters to form larger clusters.
Other algorithms such as DBSCAN and OPTICS algorithm do not require the specification of this parameter; hierarchical clustering avoids the problem altogether. The correct choice of k is often ambiguous, with interpretations depending on the shape and scale of the distribution of points in a data set and the desired clustering resolution of the ...
In the naive algorithm for agglomerative clustering, implementing a different linkage scheme may be accomplished simply by using a different formula to calculate inter-cluster distances in the algorithm. The formula that should be adjusted has been highlighted using bold text in the above algorithm description.
Alternative linkage schemes include single linkage clustering and average linkage clustering - implementing a different linkage in the naive algorithm is simply a matter of using a different formula to calculate inter-cluster distances in the initial computation of the proximity matrix and in step 4 of the above algorithm. An optimally ...