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The tree of life or universal tree of life is a metaphor, conceptual model, and research tool used to explore the evolution of life and describe the relationships between organisms, both living and extinct, as described in a famous passage in Charles Darwin's On the Origin of Species (1859). [1]
The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).
A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the tree. An unrooted tree diagram (a network) makes no assumption about the ancestral line, and does not show the origin or "root" of the taxa in question or the direction of inferred evolutionary transformations. [5]
A tree of life, like this one from Charles Darwin's notebooks c. July 1837, implies a single common ancestor at its root (labelled "1"). A phylogenetic tree directly portrays the idea of evolution by descent from a single ancestor. [3] An early tree of life was sketched by Jean-Baptiste Lamarck in his Philosophie zoologique in 1809.
Evolutionary tree showing the divergence of modern species from the last universal ancestor in the center. [5] The three domains are colored, with bacteria blue, archaea green, and eukaryotes red. The project of a complete description of the phylogenetic relationships among all biological species is dubbed the "tree of life".
TimeTree is a free public database developed by S. Blair Hedges and Sudhir Kumar, now at Temple University, for presenting times of divergence in the tree of life. [1] [2] The basic concept has been to produce and present a community consensus of the timetree of life [3] [4] from published studies, and allow easy access to that information on the web or mobile device. [2]
A dendrogram of the Tree of Life. This phylogenetic tree is adapted from Woese et al. rRNA analysis. [3] The vertical line at bottom represents the last universal common ancestor (LUCA). Heatmap of RNA-Seq data showing two dendrograms in the left and top margins. A dendrogram is a diagram representing a tree. This diagrammatic representation is ...
A rooted tree of life into three ancient monophyletic lineages: bacteria, archaea, and eukaryotes based on rRNA genes Lineages are typically visualized as subsets of a phylogenetic tree . A lineage is a single line of descent or linear chain within the tree, while a clade is a (usually branched) monophyletic group, containing a single ancestor ...