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  2. MicroRNA and microRNA target database - Wikipedia

    en.wikipedia.org/wiki/MicroRNA_and_microRNA...

    microRNA.org: microRNA.org is a database for Experimentally observed microRNA expression patterns and predicted microRNA targets & target downregulation scores. database: website [27] miRGen 4.0: DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs: database: website [28] MirGeneDB: MirGeneDB is a database of manually ...

  3. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    Web server which predicts targets for miRNAs and provides functional information on the predicted miRNA:target gene interaction from various online biological resources. Updates enable the association of miRNAs to diseases through bibliographic analysis and connection to the UCSC genome browser. Updates include sophisticated workflows.

  4. TargetScan - Wikipedia

    en.wikipedia.org/wiki/TargetScan

    In bioinformatics, TargetScan is a web server that predicts biological targets of microRNAs (miRNAs) by searching for the presence of sites that match the seed region of each miRNA. [1] For many species, other types of sites, known as 3'-compensatory sites [ 1 ] are also identified.

  5. List of RNA structure prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA_structure...

    microRNA target gene prediction using a support vector machine. Yes: No: No: webserver [131] miRror: Based on the notion of a combinatorial regulation by an ensemble of miRNAs or genes. miRror integrates predictions from a dozen of miRNA resources that are based on complementary algorithms into a unified statistical framework: Yes: No: No

  6. CeRNA database - Wikipedia

    en.wikipedia.org/wiki/CeRNA_database

    database [4] ceRNAFunction: ceRNAFunction is a web server to predict lncRNA and protein functions from pan-cancer ceRNA networks using 13 functional terms (including: GO, KEGG, BIOCARTA, etc.). webserver [3] [5] Cupid: Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competing endogenous RNA (ceRNA ...

  7. StarBase (biological database) - Wikipedia

    en.wikipedia.org/wiki/StarBase_(biological_database)

    StarBase [2] is a database for decoding miRNA-mRNA, miRNA-lncRNA, [3] miRNA-sncRNA, miRNA-circRNA, [3] miRNA-pseudogene, protein-lncRNA, [4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks [5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.

  8. RNA22 - Wikipedia

    en.wikipedia.org/wiki/RNA22

    Rna22 is a pattern-based algorithm for the discovery of microRNA target sites and the corresponding heteroduplexes. [1]The algorithm is conceptually distinct from other methods for predicting microRNA:mRNA heteroduplexes in that it does not use experimentally validated heteroduplexes for training, instead relying only on the sequences of known mature miRNAs that are found in the public databases.

  9. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    queryable-rna-seq-database Formally known as the Queryable RNA-Seq Database, this system is designed to simplify the process of RNA-seq analysis by providing the ability upload the result data from RNA-Seq analysis into a database, store it, and query it in many different ways.