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  2. Jemris - Wikipedia

    en.wikipedia.org/wiki/Jemris

    Jemris is an open source MRI sequence design and simulation framework written in C++.. It was designed to most generally and numerically integrate the Bloch equation in a single-core or parallel fashion for protons over a time course of a sequence on almost arbitrary samples with arbitrary excitation and acquisition setup.

  3. Analysis of Functional NeuroImages - Wikipedia

    en.wikipedia.org/wiki/Analysis_of_Functional_N...

    Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity.. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script.

  4. FreeSurfer - Wikipedia

    en.wikipedia.org/wiki/FreeSurfer

    57,541 copies of the FreeSurfer software package have been registered for use as of April 2022 [5] and it is a core tool in the processing pipelines of the Human Connectome Project, [6] the UK Biobank, [7] the Adolescent Brain Cognitive Development Study, [8] and the Alzheimer's Disease Neuroimaging Initiative.

  5. List of neuroimaging software - Wikipedia

    en.wikipedia.org/wiki/List_of_neuroimaging_software

    Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.

  6. FMRIB Software Library - Wikipedia

    en.wikipedia.org/wiki/FMRIB_Software_Library

    The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.

  7. ITK-SNAP - Wikipedia

    en.wikipedia.org/wiki/ITK-SNAP

    The software was designed with the audience of clinical and basic science researchers in mind, and emphasis has been placed on having a user-friendly interface and maintaining a limited feature set to prevent feature creep. ITK-SNAP is most frequently used to work with magnetic resonance imaging (MRI), cone-beam computed tomography (CBCT) and ...

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