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Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [2] A quantitative study [3] shows that proteins of TM-score = 0.5 have a posterior probability of 37% in the same CATH topology family and of 13% in the same SCOP fold family. The ...
1 Max in TM-score equation. 1 comment. Toggle the table of contents. Talk: Template modeling score. Add languages. ... Download as PDF; Printable version; In other ...
The goal of a forecaster is to maximize the score and for the score to be as large as possible, and −0.22 is indeed larger than −1.6. If one treats the truth or falsity of the prediction as a variable x with value 1 or 0 respectively, and the expressed probability as p , then one can write the logarithmic scoring rule as x ln( p ) + (1 − ...
By the original design the GDT algorithm calculates 20 GDT scores, i.e. for each of 20 consecutive distance cutoffs (0.5 Å, 1.0 Å, 1.5 Å, ... 10.0 Å). [2] For structure similarity assessment it is intended to use the GDT scores from several cutoff distances, and scores generally increase with increasing cutoff.
The Variant Call Format or VCF is a standard text file format used in bioinformatics for storing gene sequence or DNA sequence variations. The format was developed in 2010 for the 1000 Genomes Project and has since been used by other large-scale genotyping and DNA sequencing projects.
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