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The root microbiome (also called rhizosphere microbiome) is the dynamic community of microorganisms associated with plant roots. [1] Because they are rich in a variety of carbon compounds, plant roots provide unique environments for a diverse assemblage of soil microorganisms, including bacteria , fungi , and archaea .
Trichoderma is a biological control agent because of evidence that it can reduce plant pathogens in the rhizosphere. [39] Plants themselves also affect which bacterial species in the rhizosphere are selected against because of the introduction of exudates and the relationships that they maintain.
The plant microbiome, also known as the phytomicrobiome, plays roles in plant health and productivity and has received significant attention in recent years. [ 1 ] [ 2 ] The microbiome has been defined as "a characteristic microbial community occupying a reasonably well-defined habitat which has distinct physio-chemical properties.
The rhizosphere is the thin area of soil immediately surrounding the root system. It is a densely populated area in which the roots compete with invading root systems of neighboring plant species for space, water, and mineral nutrients as well as form positive and negative relationships with soil-borne microorganisms such as bacteria, fungi and insects.
A greater diversity of plants in a soil leads to a greater diversity of microbes in the rhizosphere and furthermore can lead to greater suppression of soil diseases. [9] Management, such as informed crop rotation and soil solarization , can create suppressive soils that naturally suppress pathogens.
The host plant provides the bacteria with amino acids so they do not need to assimilate ammonia. [5] The amino acids are then shuttled back to the plant with newly fixed nitrogen. Nitrogenase is an enzyme involved in nitrogen fixation and requires anaerobic conditions. Membranes within root nodules are able to provide these conditions.
The diagram on the right illustrates that rhizosphere microorganisms like plant-growth-promoting bacteria (PGPB), arbuscular mycorrhizal fungi (AMF), and fungi from the genus Trichoderma spp. can establish beneficial interactions with plants, promoting plant growth and development, increasing the plant defense system against pathogens ...
The laimosphere is the microbiologically enriched zone of soil that surrounds below-ground portions of plant stems; the laimosphere is analogous to the rhizosphere and spermosphere. The combining form laim- from laimos (Greek: λαιμός, "throat") denotes a connecting organ (neck) while -sphere indicates a zone of influence.