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Uses adaptative seeds and copes more efficiently with repeat-rich sequences (e.g. genomes). For example: it can align reads to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. Yes Yes Yes Yes Free, GPL [46] 2011 MAQ Ungapped alignment that takes into account quality scores for each base. Free, GPL: mrFAST, mrsFAST
The FASTA file format used as input for this software is now largely used by other sequence database search tools (such as BLAST) and sequence alignment programs (Clustal, T-Coffee, etc.). Search method
In bioinformatics and biochemistry, the FASTA format is a text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented using single-letter codes.
The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
Commercial tools such as DNASTAR Lasergene, Geneious, and PatternHunter are also available. Tools annotated as performing sequence alignment are listed in the bio.tools registry. Alignment algorithms and software can be directly compared to one another using a standardized set of benchmark reference multiple sequence alignments known as ...
In the field of translation studies a bitext is a merged document composed of both source- and target-language versions of a given text. Bitexts are generated by a piece of software called an alignment tool, or a bitext tool, which automatically aligns the original and translated versions of the same text. The tool generally matches these two ...
Bitext word alignment finds out corresponding words in two texts. Bitext word alignment or simply word alignment is the natural language processing task of identifying translation relationships among the words (or more rarely multiword units) in a bitext, resulting in a bipartite graph between the two sides of the bitext, with an arc between two words if and only if they are translations of ...
Additionally, flush-right alignment is used to set off special text in English, such as attributions to authors of quotes printed in books and magazines, or text associated with an image to its right. Flush right is often used when formatting tables of data. It is used to align text to the right margin; in this case, the left ends will be unequal.