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One of Fiji's principal aims is to make the installation of ImageJ, Java, Java 3D, the plugins, and further convenient components, as easy as possible. As a consequence, Fiji enjoys more and more active users. [7]
ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation (LOCI, University of Wisconsin). [ 2 ] [ 3 ] Its first version, ImageJ 1.x, is developed in the public domain , while ImageJ2 and the related projects SciJava , ImgLib2 , and SCIFIO are ...
Pre-trained workflows can be executed directly from ImageJ/Fiji using the ilastik-ImageJ plugin. [4] Pre-trained ilastik Pixel Classification workflows can be run directly in Python with the ilastik Python package, [5] which is available via conda.
ImageJ: Image processing program developed at the National Institutes of Health. See ImageJ2 and FIJI for modified and extended versions. Wayne Rasband (NIH) 1997: 1.54k [15] 2024-09-16 Free Public domain: ImageMagick: Command line software suite for displaying, converting, and editing raster image files ImageMagick Studio LLC 1990: 7.1.1-43 ...
Fiji – ImageJ-based image processing; Ilastik – Image-classification and segmentation software; ImageJ – Image processing application developed at the National Institutes of Health; IMOD – 2D and 3D analysis of electron microscopy data; ITK – Development framework used for creation of image segmentation and registration programs
Image SXM is an image analysis software specialized in scanning microscope images. It is based on the public domain software NIH Image (now ImageJ from the National Institutes of Health) and extended to handle scanning microscope images, especially of the SxM formats (SAM, SCM, SEM, SFM, SLM, SNOM, SPM, STM), hence its name.
3D Slicer is a free open source software (BSD-style license) that is a flexible, modular platform for image analysis and visualization. 3D Slicer is extended to enable development of both interactive and batch processing tools for a variety of applications.
IMOD includes over 180 command line programs listed here and three main GUI programs: . 3dmod - IMOD's main GUI used to view and segment images and 3D vector models.; Midas - A program used to align images over the top of each other, typically to apply fine adjustments after automatic cross-correlation.