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The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).
The results are a phylogenetic tree—a diagram setting the hypothetical relationships between organisms and their evolutionary history. [4] The tips of a phylogenetic tree can be living taxa or fossils, which represent the present time or "end" of an evolutionary lineage, respectively. A phylogenetic diagram can be rooted or unrooted.
The science that tries to reconstruct phylogenetic trees and thus discover clades is called phylogenetics or cladistics, the latter term coined by Ernst Mayr (1965), derived from "clade". The results of phylogenetic/cladistic analyses are tree-shaped diagrams called cladograms; they, and all their branches, are phylogenetic hypotheses. [12]
They are inferences based on patterns of relationship among taxa inferred in a phylogenetic analysis of extant organisms and/or fossils. [1] The last universal common ancestor (LUCA) is the most recent common ancestor of all current life on Earth, estimated to have lived some 3.5 to 3.8 billion years ago (in the Paleoarchean). [2] [3] [note 1]
A tree of life, like this one from Charles Darwin's notebooks c. July 1837, implies a single common ancestor at its root (labelled "1"). A phylogenetic tree directly portrays the idea of evolution by descent from a single ancestor. [3] An early tree of life was sketched by Jean-Baptiste Lamarck in his Philosophie zoologique in 1809.
These evolutionary lineages can thereby be portrayed through a phylogenetic tree, or cladogram, where varying relatedness amongst species is evidently depicted. Through this tree, organisms can be categorized by divergence from the common ancestor, and primitive characters, to clades of organisms with shared derived character states.
Haeckel's paleontological tree of vertebrates (about 1879). Evolutionary history of given species is described in phylogenetic tree. Phylogenetic relationships are discovered through phylogenetic inference methods that evaluate observed heritable traits, such as DNA sequences or overall morpho-anatomical, ethological, and other characteristics.
Today, cladistics is the most popular method for inferring phylogenetic trees from morphological data. In the 1990s, the development of effective polymerase chain reaction techniques allowed the application of cladistic methods to biochemical and molecular genetic traits of organisms, vastly expanding the amount of data available for phylogenetics.