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  2. Single-nucleotide polymorphism - Wikipedia

    en.wikipedia.org/wiki/Single-nucleotide_polymorphism

    In genetics and bioinformatics, a single-nucleotide polymorphism (SNP / s n ɪ p /; plural SNPs / s n ɪ p s /) is a germline substitution of a single nucleotide at a specific position in the genome. Although certain definitions require the substitution to be present in a sufficiently large fraction of the population (e.g. 1% or more), [ 1 ...

  3. SNP array - Wikipedia

    en.wikipedia.org/wiki/SNP_array

    A single nucleotide polymorphism (SNP), a variation at a single site in DNA, is the most frequent type of variation in the genome. Around 335 million SNPs have been identified in the human genome , [ 1 ] 15 million of which are present at frequencies of 1% or higher across different populations worldwide.

  4. Bisulfite sequencing - Wikipedia

    en.wikipedia.org/wiki/Bisulfite_sequencing

    A variant of this technique, described by Wong et al., uses allele-specific primers that incorporate single-nucleotide polymorphisms into the sequence of the sequencing primer, thus allowing for separate analysis of maternal and paternal alleles. [9] This technique is of particular usefulness for genomic imprinting analysis.

  5. SNP genotyping - Wikipedia

    en.wikipedia.org/wiki/SNP_genotyping

    SNP genotyping is the measurement of genetic variations of single nucleotide polymorphisms (SNPs) between members of a species. It is a form of genotyping, which is the measurement of more general genetic variation. SNPs are one of the most common types of genetic variation.

  6. Nucleotide diversity - Wikipedia

    en.wikipedia.org/wiki/Nucleotide_diversity

    DnaSP — DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. MEGA, Molecular Evolutionary Genetics Analysis, is a software package used for estimating rates of molecular evolution, as well as generating phylogenetic trees, and aligning DNA sequences. Available for Windows ...

  7. Tag SNP - Wikipedia

    en.wikipedia.org/wiki/Tag_SNP

    A tag SNP is a representative single nucleotide polymorphism (SNP) in a region of the genome with high linkage disequilibrium that represents a group of SNPs called a haplotype. It is possible to identify genetic variation and association to phenotypes without genotyping every SNP in a chromosomal region.

  8. Genotyping by sequencing - Wikipedia

    en.wikipedia.org/wiki/Genotyping_by_sequencing

    In the field of genetic sequencing, genotyping by sequencing, also called GBS, is a method to discover single nucleotide polymorphisms (SNP) in order to perform genotyping studies, such as genome-wide association studies . [1] GBS uses restriction enzymes to reduce genome complexity and genotype multiple DNA samples. [2]

  9. Genetic marker - Wikipedia

    en.wikipedia.org/wiki/Genetic_marker

    A genetic marker is a gene or DNA sequence with a known location on a chromosome that can be used to identify individuals or species.It can be described as a variation (which may arise due to mutation or alteration in the genomic loci) that can be observed.