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PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). [1] It consists of 65 portable programs, i.e., the source code is written in the programming language C.
Free GeneXus: GeneXus Cross Platform (multiple) 1991 v17 Proprietary: Genshi (templating language) Edgewall Software cross-platform (Python) 2006-08-03 0.5.1 2008-07-09 Jinja (Template engine) Pocoo team cross-platform (Python) 2.1.1 BSD: Kid (templating language) Ryan Tomayko cross-platform (Python) 0.9.6 2006-12-20 Mako: Michael Bayer
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses.Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source. [1]
DVC is a free and open-source, platform-agnostic version system for data, machine learning models, and experiments. [1] It is designed to make ML models shareable, experiments reproducible, [2] and to track versions of models, data, and pipelines. [3] [4] [5] DVC works on top of Git repositories [6] and cloud storage. [7]
PyCharm – Cross-platform Python IDE with code inspections available for analyzing code on-the-fly in the editor and bulk analysis of the whole project. PyDev – Eclipse-based Python IDE with code analysis available on-the-fly in the editor or at save time. Pylint – Static code analyzer. Quite stringent; includes many stylistic warnings as ...
Tree-sitter parsers have been written for these languages and many others. [11] GitHub uses Tree-sitter to support in-browser symbolic code navigation in Git repositories. [12] Tree-sitter uses a GLR parser, a type of LR parser. [13] [14] [12] Tree-sitter was originally developed by GitHub for use in the Atom text editor, where it was first ...
An integrated software environment for tree visualisation and annotation: LM [19] Archaeopteryx: Java tree viewer and editor (used to be ATV) [20] BioNumerics: Universal platform for the management, storage and analysis of all types of biological data, including tree and network inference of sequence data: W [21] Dendroscope
Both binaries and source code are available for SageMath from the download page. If SageMath is built from source code, many of the included libraries such as OpenBLAS, FLINT, GAP (computer algebra system), and NTL will be tuned and optimized for that computer, taking into account the number of processors, the size of their caches, whether there is hardware support for SSE instructions, etc.