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  2. List of gene prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_gene_prediction...

    Fast detection of coding regions in short genome sequences: Dragon Promoter Finder Program to recognize vertebrate RNA polymerase II promoters: Vertebrates [7] EasyGene: The gene finder is based on a hidden Markov model (HMM) that is automatically estimated for a new genome. Prokaryotes [8] [9] EuGene: Integrative gene finding: Prokaryotes ...

  3. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Algorithm and program for comparing primary biological sequence information, including DNA and protein sequences. Cross-platform: Public domain: National Center for Biotechnology Information: CP2K: Perform atomistic simulations of solid state, liquid, molecular and biological systems, written in Fortran 2003. Linux, macOS, Windows: GPL and LGPL

  4. Integrated Genome Browser - Wikipedia

    en.wikipedia.org/wiki/Integrated_Genome_Browser

    Integrated Genome Browser (IGB) (pronounced Ig-Bee) [1] is an open-source genome browser, a visualization tool used to observe biologically-interesting patterns in genomic data sets, including sequence data, gene models, alignments, and data from DNA microarrays.

  5. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    Indexes the genome with periodic seeds to quickly find alignments with full sensitivity up to four mismatches. It can map Illumina and SOLiD reads. Unlike most mapping programs, speed increases for longer read lengths. Yes Free, GPL [49] PRIMEX Indexes the genome with a k-mer lookup table with full sensitivity up to an adjustable number of ...

  6. Multiomics - Wikipedia

    en.wikipedia.org/wiki/Multiomics

    Number of citations of the terms "Multiomics" and "Multi-omics" in PubMed until the 31st December 2021. Multiomics, multi-omics, integrative omics, "panomics" or "pan-omics" is a biological analysis approach in which the data sets are multiple "omes", such as the genome, proteome, transcriptome, epigenome, metabolome, and microbiome (i.e., a meta-genome and/or meta-transcriptome, depending ...

  7. GENSCAN - Wikipedia

    en.wikipedia.org/wiki/GENSCAN

    Tests were conducted to evaluate the accuracy of GENSCAN with short data sets. One test was done on the Burset/Guigó dataset containing 570 vertebrate multi-exon gene sequences. The data produced from this test is shown in the table below, along with the data produced by testing other programs with the same dataset.

  8. List of alignment visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_alignment...

    The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.

  9. deCODE genetics - Wikipedia

    en.wikipedia.org/wiki/DeCODE_genetics

    deCODE genetics (Icelandic: Íslensk erfðagreining) is a biopharmaceutical company based in Reykjavík, Iceland.The company was founded in 1996 by Kári Stefánsson [1] with the aim of using population genetics studies to identify variations in the human genome associated with common diseases, and to apply these discoveries "to develop novel methods to identify, treat and prevent diseases."